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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2dgnDOIAdenylosuccinate synthetase isozyme 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2dgnDOIAdenylosuccinate synthetase isozyme 1/1.000
1qf5RPLAdenylosuccinate synthetase/0.564
1qf4RPDAdenylosuccinate synthetase/0.548
1cg0IMOAdenylosuccinate synthetase/0.539
1lonIMOAdenylosuccinate synthetase isozyme 1/0.534
1p9bIMOAdenylosuccinate synthetase/0.533
1cg4IMOAdenylosuccinate synthetase/0.526
1kszPGSAdenylosuccinate synthetase/0.522
2gcqDOIAdenylosuccinate synthetase/0.515
1cg3IMOAdenylosuccinate synthetase/0.503
1nhtPGSAdenylosuccinate synthetase/0.493
2ebaFADPutative glutaryl-CoA dehydrogenase/0.493
1cg1IMOAdenylosuccinate synthetase/0.492
3iaaTYDCalG2/0.492
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.491
1g1aNADdTDP-glucose 4,6-dehydratase/0.487
3o0o5ADVitamin B12-dependent ribonucleotide reductase/0.482
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.482
1xddAAYIntegrin alpha-L/0.481
1lbcCYZGlutamate receptor 2/0.478
3f3sNADLambda-crystallin homolog/0.478
3r7kFDAProbable acyl CoA dehydrogenase/0.477
4ambDUDPutative glycosyl transferase/0.475
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.475
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.474
2c20NADUDP-glucose 4-epimerase/0.472
1me6IVSPlasmepsin-23.4.23.390.471
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.470
3uylTYDProbable NDP-rhamnosyltransferase/0.470
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.469
2xx91NFGlutamate receptor 2/0.469
4dd8BATDisintegrin and metalloproteinase domain-containing protein 83.4.240.469
3toxNAPPutative oxidoreductase/0.467
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.466
1ha3MAUElongation factor Tu-A/0.465
3b6zCO7Enoyl reductase LovC10.465
4eudCOASuccinyl-CoA:acetate CoA-transferase/0.465
2givACOHistone acetyltransferase KAT8/0.463
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.463
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.463
3phiNDPShikimate dehydrogenase (NADP(+))/0.463
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.463
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.463
5irnADPNucleotide binding oligomerization domain containing 2/0.463
2rcyNAPPyrroline-5-carboxylate reductase/0.462
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.462
4mdhNADMalate dehydrogenase, cytoplasmic1.1.1.370.462
1xe55FEPlasmepsin-23.4.23.390.461
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.461
4yagNAIC alpha-dehydrogenase/0.461
4yaiNAIC alpha-dehydrogenase/0.461
2bl4NADLactaldehyde reductase1.1.1.770.460
3r95ACOMccE protein/0.460
3lqsPSZD-alanine aminotransferase2.6.1.210.459
3ox4NADAlcohol dehydrogenase 21.1.1.10.459
4d5gFADCyclohexane-1,2-dione hydrolase3.7.1.110.459
4q0kGA3Phytohormone-binding protein/0.459
5e5h0T1Succinyl-CoA:acetate CoA-transferase/0.459
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.459
1cdoNADAlcohol dehydrogenase 11.1.1.10.458
1mjbACOHistone acetyltransferase ESA1/0.458
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.458
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.458
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.458
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.458
4h8aNAIUreidoglycolate dehydrogenase (NAD(+))1.1.1.3500.458
4jtqNAPAldo-keto reductase family 1 member C2/0.458
2ikuLIYRenin3.4.23.150.457
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.457
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.457
1rneC60Renin3.4.23.150.456
2gjlFMNNitronate monooxygenase1.13.12.160.456
2oapANPType II secretion system protein (GspE-2)/0.456
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.456
1szgFNSCytochrome b2, mitochondrial1.1.2.30.455
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.455
3to6LYS_CMCHistone acetyltransferase ESA1/0.455
5ahsFADAcyl-CoA dehydrogenase/0.455
1yqxNAPSinapyl alcohol dehydrogenase/0.454
2ahrNAPPyrroline-5-carboxylate reductase/0.454
2zfnACOHistone acetyltransferase RTT1092.3.1.480.454
3lqfNADGalactitol dehydrogenase/0.454
4opiFDAConserved Archaeal protein/0.454
4xguADPPutative pachytene checkpoint protein 2/0.454
2c29NAPDihydroflavonol 4-reductase/0.453
2xhd7T9Glutamate receptor 2/0.453
3cic316Beta-secretase 13.4.23.460.453
3d3wNAPL-xylulose reductase1.1.1.100.453
3nxxNDPDihydrofolate reductase1.5.1.30.453
3widNAPGlucose 1-dehydrogenase/0.453
4dfg0JVGag-Pol polyprotein3.4.23.160.453
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.453
1jkx138Phosphoribosylglycinamide formyltransferase/0.452
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.452
1q5mNDPProstaglandin-E(2) 9-reductase1.1.1.1890.452
1x1cSAHC-20 methyltransferase/0.452
3b70NAPEnoyl reductase LovC10.452
3dzvADPHydroxyethylthiazole kinase/0.452
3r96ACOMccE protein/0.452
4cvmANPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase/0.452
4ejmNAPPutative zinc-binding dehydrogenase/0.452
1ae1NAPTropinone reductase 1/0.451
1hetNADAlcohol dehydrogenase E chain1.1.1.10.451
2ifaFMNUncharacterized protein/0.451
2y0mACOHistone acetyltransferase KAT8/0.451
3vydVYDRenin3.4.23.150.451
4egbNADdTDP-glucose 4,6-dehydratase/0.451
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.450
2gmhFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.450
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.450
3qwbNDPProbable quinone oxidoreductase1.6.5.50.450
4dpuAGSMevalonate diphosphate decarboxylase/0.450
5jscFADPutative acyl-CoA dehydrogenase/0.450
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.449
1xkvATPPhosphoenolpyruvate carboxykinase (ATP)/0.449
2g1s4IGRenin3.4.23.150.449
2il2LIXRenin3.4.23.150.449
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.449
2w3bNDPDihydrofolate reductase1.5.1.30.449
3gqvNAPEnoyl reductase LovC10.449
3hl0NADMaleylacetate reductase/0.449
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.449
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.449
4g7gVFVLanosterol 14-alpha-demethylase/0.449
4iv6FDAIsovaleryl-CoA dehydrogenase/0.449
4ji91M3Tyrosine-protein kinase JAK2/0.449
4tlzFADKtzI/0.449
4ytnFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.449
5af7FADAcyl-CoA dehydrogenase/0.449
5fm7ADPRuvB-like helicase/0.449
5jydNADShort chain dehydrogenase/0.449
1drhNAPDihydrofolate reductase1.5.1.30.448
1h73ANPHomoserine kinase2.7.1.390.448
1mjaCOAHistone acetyltransferase ESA1/0.448
1xe65FPPlasmepsin-23.4.23.390.448
1ykfNAPNADP-dependent isopropanol dehydrogenase1.1.1.800.448
2fn7NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.448
2p5uNADUDP-glucose 4-epimerase/0.448
3gw9VNILanosterol 14-alpha-demethylase/0.448
3qfrFMNNADPH--cytochrome P450 reductase/0.448
4eagATP5'-AMP-activated protein kinase subunit gamma-1/0.448
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.448
5jlaNADPutative short-chain dehydrogenase/reductase/0.448
1rfuADPPyridoxal kinase2.7.1.350.447
1tehNADAlcohol dehydrogenase class-31.1.1.10.447
1w4xFADPhenylacetone monooxygenase1.14.13.920.447
1w6hTITPlasmepsin-23.4.23.390.447
2e07SAHDiphthine synthase/0.447
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.447
2gh5FADGlutathione reductase, mitochondrial1.8.1.70.447
2ivnANPtRNA N6-adenosine threonylcarbamoyltransferase/0.447
2qn3F55Glycogen phosphorylase, muscle form2.4.1.10.447
4eu5COASuccinyl-CoA:acetate CoA-transferase/0.447
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.447
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.447
1bim0QBRenin3.4.23.150.446
1fy7COAHistone acetyltransferase ESA1/0.446
1zemNADXylitol dehydrogenase/0.446
2g1y5IGRenin3.4.23.150.446
3c1y2BADNA integrity scanning protein DisA/0.446
3d91REMRenin3.4.23.150.446
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.446
3nl6TPSUncharacterized protein/0.446
3uaxNOSPurine nucleoside phosphorylase DeoD-type/0.446
3wagTYDGlycosyltransferase/0.446
4lcjNADC-terminal-binding protein 2/0.446
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.446
2irzI02Beta-secretase 13.4.23.460.445
2npiATPmRNA cleavage and polyadenylation factor CLP1/0.445
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
4kuhCAA3-hydroxybutyryl-CoA dehydrogenase/0.445
1geeNADGlucose 1-dehydrogenase1.1.1.470.444
1ia1NDPDihydrofolate reductase1.5.1.30.444
1jueFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.444
1n5dNDPCarbonyl reductase [NADPH] 1/0.444
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.444
2g1r3IGRenin3.4.23.150.444
2xtnGTPGTPase IMAP family member 2/0.444
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.444
3mauEXTPutative sphingosine-1-phosphate lyase/0.444
3qlrNDPDihydrofolate reductase1.5.1.30.444
3zidGDPTubulin-like protein CetZ/0.444
4bfxZVXPantothenate kinase2.7.1.330.444
5c2tFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.444
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.444
1rfvADPPyridoxal kinase2.7.1.350.443
1rx1NAPDihydrofolate reductase1.5.1.30.443
2fonFADAcyl-coenzyme A oxidase/0.443
2gvdFKPAdenylate cyclase type 2/0.443
2gvdFKPAdenylate cyclase type 5/0.443
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.443
3jv7NADSecondary alcohol dehydrogenase/0.443
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.443
3tjzGNPADP-ribosylation factor 1/0.443
4an4DUDPutative glycosyl transferase/0.443
4eb5PLPCysteine desulfurase IscS 2/0.443
5dw60T1Succinyl-CoA:acetate CoA-transferase/0.443
1g6kNADGlucose 1-dehydrogenase1.1.1.470.442
1p0fNAPNADP-dependent alcohol dehydrogenase1.1.1.20.442
2a92NAIL-lactate dehydrogenase/0.442
2e8rSAHDiphthine synthase/0.442
2qbuSAHPrecorrin-2 methyltransferase/0.442
2rlcCHDCholoylglycine hydrolase3.5.1.240.442
2x0iNAIMalate dehydrogenase/0.442
3kgcLY7Glutamate receptor 2/0.442
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.442
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.442
4blrUTPNTPase P4/0.442
4euaCOASuccinyl-CoA:acetate CoA-transferase/0.442
4h8nNDPNADPH-dependent conjugated polyketone reductase C2/0.442
4oztP1AEcdysone receptor, putative/0.442
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.442
5idwNAPShort-chain dehydrogenase/reductase SDR/0.442
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.441
1g8jMGDArsenite oxidase subunit AioA1.20.9.10.441
1gcoNADGlucose 1-dehydrogenase1.1.1.470.441
1jqiFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial/0.441
1yb5NAPQuinone oxidoreductase1.6.5.50.441
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.441
2g1o2IGRenin3.4.23.150.441
2owuSAHDiphthine synthase/0.441
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.441
3ai3NDPNADPH-sorbose reductase/0.441
3ieuGDPGTPase Era/0.441
4dptAGSMevalonate diphosphate decarboxylase/0.441
4gl4NAIAlcohol dehydrogenase class-3/0.441
4lnbED5CaaX farnesyltransferase beta subunit Ram1/0.441
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
5d3qGDPDynamin-13.6.5.50.441
1bil0IURenin3.4.23.150.440
1f0xFADD-lactate dehydrogenase1.1.1.280.440
1fm4DXCMajor pollen allergen Bet v 1-L/0.440
1ma0NADAlcohol dehydrogenase class-31.1.1.10.440
1x1aSAMC-20 methyltransferase/0.440
2g226IGRenin3.4.23.150.440
2omeNADC-terminal-binding protein 2/0.440
3cb2GDPTubulin gamma-1 chain/0.440
3daaPDDD-alanine aminotransferase2.6.1.210.440
3owaFADAcyl-CoA dehydrogenase/0.440
3vdqNAD3-hydroxybutyrate dehydrogenase/0.440
5ao1DG3Deoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.440