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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2d7dADPUvrABC system protein B

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2d7dADPUvrABC system protein B/1.000
2nmvADPUvrABC system protein B/0.623
1j39UPGDNA beta-glucosyltransferase/0.472
4s26SAHPhosphomethylpyrimidine synthase, chloroplastic4.1.99.170.467
3r9iADPSeptum site-determining protein MinD/0.465
3uwqU5POrotidine 5'-phosphate decarboxylase/0.463
3lnv1ZZSaframycin Mx1 synthetase B/0.455
2ggqTTPDual sugar-1-phosphate nucleotidylyltransferase/0.452
4nt03DUOrotidine 5'-phosphate decarboxylase4.1.1.230.450
4s32ANPMitogen-activated protein kinase 12.7.11.240.448
1nzdUPGDNA beta-glucosyltransferase/0.447
3q9lATPSeptum site-determining protein MinD/0.445
4u03GTPCyclic GMP-AMP synthase/0.444
3kozZ97D-ornithine 4,5-aminomutase subunit beta/0.443
1lolXMPOrotidine 5'-phosphate decarboxylase4.1.1.230.441
2cmkCDPCytidylate kinase2.7.4.250.441
3juqAJDPhenazine biosynthesis protein A/B/0.441
4lnkADPGlutamine synthetase6.3.1.20.441
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.440
3wb2YGPUncharacterized protein MJ0488/0.440
4aqkADPInositol-pentakisphosphate 2-kinase2.7.1.1580.440
4g3sUD1Bifunctional protein GlmU/0.440