sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2cts | COA | Citrate synthase, mitochondrial | 2.3.3.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2cts | COA | Citrate synthase, mitochondrial | 2.3.3.1 | 1.000 | |
| 5cts | CMC | Citrate synthase, mitochondrial | 2.3.3.1 | 0.745 | |
| 6cts | CIC | Citrate synthase, mitochondrial | 2.3.3.1 | 0.726 | |
| 1csc | CMC | Citrate synthase, mitochondrial | 2.3.3.1 | 0.564 | |
| 3csc | ACO | Citrate synthase, mitochondrial | 2.3.3.1 | 0.564 | |
| 1aj8 | COA | Citrate synthase | / | 0.535 | |
| 2h12 | CMX | Citrate synthase | / | 0.529 | |
| 2r26 | CMC | Citrate synthase | 2.3.3.16 | 0.528 | |
| 2r9e | SDX | Citrate synthase | 2.3.3.16 | 0.504 | |
| 2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.485 | |
| 2q5g | 1FA | Peroxisome proliferator-activated receptor delta | / | 0.473 | |
| 1gee | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.472 | |
| 1ixe | COA | Citrate synthase | / | 0.462 | |
| 2xlp | FAD | Putative flavin-containing monooxygenase | / | 0.462 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.459 | |
| 4jtq | NAP | Aldo-keto reductase family 1 member C2 | / | 0.459 | |
| 1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.457 | |
| 3r7k | FDA | Probable acyl CoA dehydrogenase | / | 0.456 | |
| 1gco | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.451 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.451 | |
| 2b37 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.451 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.450 | |
| 3owa | FAD | Acyl-CoA dehydrogenase | / | 0.450 | |
| 3bhi | NAP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.449 | |
| 4dpl | NAP | Malonyl-CoA reductase | 1.2.1.75 | 0.448 | |
| 4bii | PYW | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.447 | |
| 3pqb | VGP | Putative oxidoreductase | / | 0.446 | |
| 2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.444 | |
| 2npa | MMB | Peroxisome proliferator-activated receptor alpha | / | 0.443 | |
| 3a1c | ACP | Probable copper-exporting P-type ATPase A | 3.6.3.54 | 0.443 | |
| 2fvl | NAP | Aldo-keto reductase family 1 member C4 | 1.1.1.225 | 0.442 | |
| 2wyv | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.442 | |
| 4anx | 534 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.442 | |
| 1g6k | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.441 | |
| 3kpk | FAD | Sulfide-quinone reductase | / | 0.441 | |
| 3lpj | Z75 | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 4fj0 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.441 | |
| 4g9k | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.441 | |
| 1cyd | NDP | Carbonyl reductase [NADPH] 2 | 1.1.1.184 | 0.440 | |
| 2gmj | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.440 | |
| 2yxu | ATP | Pyridoxal kinase | 2.7.1.35 | 0.440 | |
| 3iah | NAP | Putative oxoacyl-(Acyl carrier protein) reductase | / | 0.440 | |
| 4a33 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.440 |