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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2c20NADUDP-glucose 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2c20NADUDP-glucose 4-epimerase/1.000
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.489
2p5uNADUDP-glucose 4-epimerase/0.486
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.478
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.471
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.468
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.465
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.463
1kvrNADUDP-glucose 4-epimerase5.1.3.20.461
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.460
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.455
1naiNADUDP-glucose 4-epimerase5.1.3.20.454
4egbNADdTDP-glucose 4,6-dehydratase/0.454
1eq2NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.451
3a4vNADNDP-sugar epimerase/0.449
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.448
1nahNADUDP-glucose 4-epimerase5.1.3.20.446
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.445
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.442