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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2b5j3ACGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2b5j3ACGag-Pol polyprotein2.7.7.491.000
4h4o506Gag-Pol polyprotein2.7.7.490.609
4h4m494Gag-Pol polyprotein2.7.7.490.573
4rw6494Gag-Pol polyprotein2.7.7.490.567
4mfb29TGag-Pol polyprotein2.7.7.490.560
2wonZZEGag-Pol polyprotein2.7.7.490.559
4rw4494Gag-Pol polyprotein2.7.7.490.554
2be2R22Gag-Pol polyprotein2.7.7.490.552
3dyaPZLGag-Pol polyprotein2.7.7.490.547
3c6uM22Gag-Pol polyprotein2.7.7.490.546
3lalKRVGag-Pol polyprotein2.7.7.490.545
3t1a5MAGag-Pol polyprotein2.7.7.490.536
3c6tM14Gag-Pol polyprotein2.7.7.490.532
3dokGWJPol protein/0.532
4lsl1YQGag-Pol polyprotein2.7.7.490.528
3drpR8EGag-Pol polyprotein2.7.7.490.525
3is9AC7Gag-Pol polyprotein2.7.7.490.524
3irxUDRGag-Pol polyprotein2.7.7.490.519
3t195MAGag-Pol polyprotein2.7.7.490.519
2jleI15Reverse transcriptase/RNaseH/0.512
2ynfWHUGag-Pol polyprotein2.7.7.490.511
3drrR8EGag-Pol polyprotein2.7.7.490.510
3lakKR1Gag-Pol polyprotein2.7.7.490.509
3dlgGWEGag-Pol polyprotein2.7.7.490.503
3qlhT27Gag-Pol polyprotein2.7.7.490.486
3dmjGWEPol protein/0.480
2ynhEURGag-Pol polyprotein2.7.7.490.479
3tamM06Gag-Pol polyprotein2.7.7.490.478
1c1bGCAGag-Pol polyprotein2.7.7.490.475
2ze2T27Gag-Pol polyprotein2.7.7.490.472
4g1qT27Gag-Pol polyprotein2.7.7.490.460
2zd1T27Gag-Pol polyprotein2.7.7.490.459
3bgrT27Gag-Pol polyprotein2.7.7.490.454
1rt1MKCGag-Pol polyprotein2.7.7.490.450
3lamKRPGag-Pol polyprotein2.7.7.490.448
3a1l2CCCytochrome P450/0.447
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.445
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.445
4kfbT27Gag-Pol polyprotein2.7.7.490.445
4i2pG73Gag-Pol polyprotein2.7.7.490.444
3p9tTCLRepressor/0.442