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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1zgi382Prothrombin3.4.21.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1zgi382Prothrombin3.4.21.51.000
1zgv501Prothrombin3.4.21.50.686
1mueCDDProthrombin3.4.21.50.668
1ta6177Prothrombin3.4.21.50.665
1mu6CDAProthrombin3.4.21.50.652
1d6w00RProthrombin3.4.21.50.645
1z71L17Prothrombin3.4.21.50.632
3c1kT15Prothrombin3.4.21.50.632
1t4v14AProthrombin3.4.21.50.610
1a4wQWEProthrombin3.4.21.50.603
4ayy9MXProthrombin3.4.21.50.599
1k21IGNProthrombin3.4.21.50.595
1ypmRA4Prothrombin3.4.21.50.591
2zfq45UProthrombin3.4.21.50.589
1xm1GAHProthrombin3.4.21.50.586
2zi224UProthrombin3.4.21.50.582
2cf8ESHProthrombin3.4.21.50.581
1k22MELProthrombin3.4.21.50.575
1afeALZProthrombin3.4.21.50.573
2jh0701Prothrombin3.4.21.50.572
1t4u81AProthrombin3.4.21.50.571
2cn0F25Prothrombin3.4.21.50.571
2jh5895Prothrombin3.4.21.50.571
2uuk897Prothrombin3.4.21.50.566
1yplRA8Prothrombin3.4.21.50.563
2jh6894Prothrombin3.4.21.50.560
4n3l2FNProthrombin3.4.21.50.560
1d9i00PProthrombin3.4.21.50.558
1nzq162Prothrombin3.4.21.50.557
1d4pBPPProthrombin3.4.21.50.554
4e7r0NWProthrombin3.4.21.50.554
2r2mI50Prothrombin3.4.21.50.553
7kmeACE_0BN_CHG_PRRProthrombin3.4.21.50.549
1oytFSNProthrombin3.4.21.50.548
2cf9348Prothrombin3.4.21.50.547
2zfr46UProthrombin3.4.21.50.544
4az29MUProthrombin3.4.21.50.544
1sb1165Prothrombin3.4.21.50.543
2zhw12UProthrombin3.4.21.50.543
1c4yIH3Prothrombin3.4.21.50.542
1d3pBT3Prothrombin3.4.21.50.537
2v3oI26Prothrombin3.4.21.50.537
2gdeSN3Prothrombin3.4.21.50.536
4ax9N5NProthrombin3.4.21.50.535
1ypgUIRProthrombin3.4.21.50.534
2zf051UProthrombin3.4.21.50.534
1ae8AZLProthrombin3.4.21.50.533
1ypjUIBProthrombin3.4.21.50.533
2zhq27UProthrombin3.4.21.50.533
3qwc98PProthrombin3.4.21.50.532
4lxb7R9Prothrombin3.4.21.50.532
2anmCDOProthrombin3.4.21.50.530
1ypeUIPProthrombin3.4.21.50.529
1d3dBZTProthrombin3.4.21.50.524
1ypkCCRProthrombin3.4.21.50.524
2zc922UProthrombin3.4.21.50.524
4bamMM9Prothrombin3.4.21.50.524
2uuj896Prothrombin3.4.21.50.521
2znk31UProthrombin3.4.21.50.520
1zrb062Prothrombin3.4.21.50.518
2bdyUNBProthrombin3.4.21.50.518
4ayv9MQProthrombin3.4.21.50.518
2v3hI25Prothrombin3.4.21.50.517
2bvs2CEProthrombin3.4.21.50.513
2pksG44Prothrombin3.4.21.50.513
1riwOSCProthrombin3.4.21.50.509
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.508
2zgx29UProthrombin3.4.21.50.507
2zhe13UProthrombin3.4.21.50.507
2zhf49UProthrombin3.4.21.50.507
2zda32UProthrombin3.4.21.50.506
1nm6L86Prothrombin3.4.21.50.505
1mu8CDBProthrombin3.4.21.50.502
2zdv37UProthrombin3.4.21.50.502
4bakM67Prothrombin3.4.21.50.502
4rn615UProthrombin3.4.21.50.501
1jwtBLIProthrombin3.4.21.50.500
3eq02TSProthrombin3.4.21.50.500
4baqM4ZProthrombin3.4.21.50.497
2zfp19UProthrombin3.4.21.50.492
2zgb21UProthrombin3.4.21.50.492
1c4uIH1Prothrombin3.4.21.50.491
3biu10UProthrombin3.4.21.50.487
3dux64UProthrombin3.4.21.50.487
1vzqSHYProthrombin3.4.21.50.484
4bahMELProthrombin3.4.21.50.484
1w7gMIUProthrombin3.4.21.50.483
4banM6SProthrombin3.4.21.50.480
4baoMVFProthrombin3.4.21.50.479
2zff53UProthrombin3.4.21.50.476
2zg050UProthrombin3.4.21.50.475
5cmx0G6Prothrombin3.4.21.50.471
2bxtC2DProthrombin3.4.21.50.459
1c4vIH2Prothrombin3.4.21.50.442
4loy6XSProthrombin3.4.21.50.440