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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1yqxNAPSinapyl alcohol dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1yqxNAPSinapyl alcohol dehydrogenase/1.000
1yqdNAPSinapyl alcohol dehydrogenase/0.623
4c4oNADSADH/0.485
1cdoNADAlcohol dehydrogenase 11.1.1.10.467
2xaaNADSecondary alcohol dehydrogenase/0.465
3ukoNADAlcohol dehydrogenase class-3/0.458
1lluNADAlcohol dehydrogenase/0.454
1yb5NAPQuinone oxidoreductase1.6.5.50.454
4w6z8IDAlcohol dehydrogenase 11.1.1.10.454
3jv7NADSecondary alcohol dehydrogenase/0.451
4nwzFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.451
3twoNDPMannitol dehydrogenase/0.450
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.450
1h2bNAJNAD-dependent alcohol dehydrogenase/0.448
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.440
4gkvNADAlcohol dehydrogenase, propanol-preferring1.1.1.10.440