Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.291.000
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.534
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.523
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.520
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.519
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.511
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.509
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.505
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.501
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.499
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.491
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.482
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.480
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.479
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.476
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.472
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.468
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.451
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.447
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.447