Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1wy7SAHUncharacterized protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1wy7SAHUncharacterized protein/1.000
1nw3SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific2.1.1.430.498
3sr4TT8Histone-lysine N-methyltransferase, H3 lysine-79 specific2.1.1.430.491
2zifSAMMethyltransferase/0.488
3qowSAMHistone-lysine N-methyltransferase, H3 lysine-79 specific2.1.1.430.482
2f8lSAMLmo1582 protein/0.478
1ve3SAMUncharacterized protein/0.464
1sg9SAMRelease factor glutamine methyltransferase2.1.1.2970.462
4blwSAHRibosomal RNA large subunit methyltransferase J/0.462
3uj8SFGPhosphoethanolamine N-methyltransferase/0.460
5jr3SAHCarminomycin 4-O-methyltransferase DnrK2.1.1.2920.458
3q87SAMN6 ADENINE SPECIFIC DNA METHYLASE (METHYLTRANSFERASE SUPERFAMILY)/0.456
4obwSAM2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial/0.456
5epeSAHUncharacterized protein/0.455
3grrSAHProbable ribosomal RNA small subunit methyltransferase A/0.453
1nbiSAMGlycine N-methyltransferase2.1.1.200.451
3uj7SAMPhosphoethanolamine N-methyltransferase/0.451
5bxySAHPutative RNA methylase family UPF0020/0.450
4uy6SAHHistidine N-alpha-methyltransferase/0.448
1qanSAHrRNA adenine N-6-methyltransferase2.1.1.1840.447
1nv8SAMRelease factor glutamine methyltransferase2.1.1.2970.446
1vq1SAMRelease factor glutamine methyltransferase2.1.1.2970.446
3tljSAHUncharacterized protein/0.446
4r6xSAHPhosphoethanolamine N-methyltransferase/0.444
1nw5SAMModification methylase RsrI2.1.1.720.443
9mhtSAHModification methylase HhaI2.1.1.370.442
1kiaSAMGlycine N-methyltransferase2.1.1.200.440
3ha5SFGHydroxymycolate synthase MmaA42.1.10.440
3ha7B32Hydroxymycolate synthase MmaA42.1.10.440