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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1wl4COAAcetyl-CoA acetyltransferase, cytosolic2.3.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1wl4COAAcetyl-CoA acetyltransferase, cytosolic2.3.1.91.000
2ibwCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.540
2ibuCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.510
4o9cCOAAcetyl-CoA acetyltransferase2.3.1.90.509
2xviFADPutative flavin-containing monooxygenase/0.488
4c2jCOA3-ketoacyl-CoA thiolase, mitochondrial2.3.1.160.487
2ibyCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.483
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.473
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.462
4bftZVTPantothenate kinase2.7.1.330.462
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.455
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.451
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
1d3dBZTProthrombin3.4.21.50.446
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.443
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.443
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440