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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ve9FADD-amino-acid oxidase1.4.3.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ve9FADD-amino-acid oxidase1.4.3.31.000
4yjdFADD-amino-acid oxidase1.4.3.30.586
2du8FADD-amino-acid oxidase1.4.3.30.540
3axbFADPutative oxidoreductase/0.528
4yshFADGlycine oxidase/0.520
2e48FADD-amino-acid oxidase1.4.3.30.518
3vqrFADPutative oxidoreductase/0.494
3znpFADD-amino-acid oxidase1.4.3.30.492
1ryiFADGlycine oxidase1.4.3.190.490
1w4xFADPhenylacetone monooxygenase1.14.13.920.469
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.463
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.461
1ng3FADGlycine oxidase1.4.3.190.460
4mo2FDAUDP-galactopyranose mutase/0.460
4d04FADPhenylacetone monooxygenase1.14.13.920.458
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.454
1ng4FADGlycine oxidase1.4.3.190.451
2ylzFADPhenylacetone monooxygenase1.14.13.920.450
4h4yFADBiphenyl dioxygenase ferredoxin reductase subunit/0.449
4mokFADPyranose 2-oxidase/0.445
2bi8FADUDP-galactopyranose mutase5.4.99.90.442
3k4cFADPyranose 2-oxidase/0.442
3nn6FB06-hydroxy-L-nicotine oxidase/0.442
1tdeFADThioredoxin reductase1.8.1.90.441