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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1rgiATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1rgiATPActin, alpha skeletal muscle/1.000
3ffkATPActin, alpha skeletal muscle/0.575
3tu5ATPActin, alpha skeletal muscle/0.565
5ce3ATPActin/0.562
2q36ATPActin, alpha skeletal muscle/0.561
3m6gATPActin, alpha skeletal muscle/0.561
4pkgATPActin, alpha skeletal muscle/0.559
1h1vATPActin, alpha skeletal muscle/0.554
1s22ATPActin, alpha skeletal muscle/0.553
4k42ADPActin, alpha skeletal muscle/0.550
1t44ATPActin, alpha skeletal muscle/0.548
3el2ATPActin-5C/0.545
4pl8ATPActin, alpha skeletal muscle/0.541
1c0fATPMajor actin/0.539
3u4lATPActin, cytoplasmic 1/0.539
4k43ADPActin, alpha skeletal muscle/0.532
1kxpATPActin, alpha skeletal muscle/0.529
1lotATPActin, alpha skeletal muscle/0.528
2v51ATPActin, alpha skeletal muscle/0.522
1mduATPActin, alpha skeletal muscle/0.520
4ci6ATPActin/0.520
1ijjATPActin, alpha skeletal muscle/0.518
4k41ATPActin, alpha skeletal muscle/0.518
4jhdANPActin-5C/0.516
4pkiATPActin, alpha skeletal muscle/0.516
3a5mATPMajor actin/0.515
3mn9ATPActin-5C/0.515
1qz5ATPActin, alpha skeletal muscle/0.514
1nm1ATPMajor actin/0.511
4cbxATPActin-2/0.511
3mn6ATPActin-5C/0.509
1nmdATPMajor actin/0.508
1eqyATPActin, alpha skeletal muscle/0.507
2q97ATPActin, alpha skeletal muscle/0.501
3mn7ATPActin-5C/0.501
3m1fATPActin, alpha skeletal muscle/0.500
3u9dATPActin, alpha skeletal muscle/0.496
3dawATPActin, alpha skeletal muscle/0.495
1yxqATPActin, alpha skeletal muscle/0.491
4pkhADPActin, alpha skeletal muscle/0.489
3eksATPActin-5C/0.486
4m63ATPActin-5C/0.486
2p9kATPActin-related protein 2/0.485
4rwtANPActin-5C/0.458
3a5oATPMajor actin/0.454
3w3dATPActin, gamma-enteric smooth muscle/0.453
2oanATPActin, cytoplasmic 1/0.447
3ekuATPActin-5C/0.447
1dejATPMajor actin/0.441