scPDB - Distribution of Binding site Similarity values of 1nw6 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1nw6	SFG	Modification methylase RsrI	2.1.1.72

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1nw6	SFG	Modification methylase RsrI	2.1.1.72	1.000
1nw5	SAM	Modification methylase RsrI	2.1.1.72	0.786
1eg2	MTA	Modification methylase RsrI	2.1.1.72	0.561
3swr	SFG	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.476
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.468
2ore	SAH	DNA adenine methylase	2.1.1.72	0.465
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.465
1boo	SAH	Modification methylase PvuII	2.1.1.113	0.462
4rts	SAM	DNA adenine methylase	2.1.1.72	0.458
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.455
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.454
4rtp	SAM	DNA adenine methylase	2.1.1.72	0.453
2zif	SAM	Methyltransferase	/	0.452
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.452
3ldf	SAH	Uncharacterized protein	/	0.451
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.451
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.449
4anx	534	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.448
4gol	SA8	DNA adenine methylase	2.1.1.72	0.448
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.448
2ibt	NEA	Modification methylase TaqI	2.1.1.72	0.447
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.446
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.446
2zzn	SAM	tRNA (guanine(37)-N1)-methyltransferase Trm5b	2.1.1.228	0.445
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.445
3pt9	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.445
2r43	G3G	Gag-Pol polyprotein	3.4.23.16	0.444
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.443
2ih2	NEA	Modification methylase TaqI	2.1.1.72	0.442
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.442
1hsg	MK1	Gag-Pol polyprotein	/	0.441
4onj	SFG	DNA methyltransferase	/	0.441
2qnq	QN3	Gag-Pol polyprotein	3.4.23.16	0.440