2.810 Å
X-ray
2014-01-28
Name: | DNA methyltransferase |
---|---|
ID: | Q76KU6_TOBAC |
AC: | Q76KU6 |
Organism: | Nicotiana tabacum |
Reign: | Eukaryota |
TaxID: | 4097 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 74.636 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.578 | 772.875 |
% Hydrophobic | % Polar |
---|---|
40.17 | 59.83 |
According to VolSite |
HET Code: | SFG |
---|---|
Formula: | C15H24N7O5 |
Molecular weight: | 382.395 g/mol |
DrugBank ID: | DB01910 |
Buried Surface Area: | 66.78 % |
Polar Surface area: | 214.71 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 2 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-37.5157 | -58.181 | -29.8555 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O | N | PHE- 462 | 3.45 | 120.13 | H-Bond (Protein Donor) |
OXT | N | PHE- 462 | 2.7 | 158 | H-Bond (Protein Donor) |
N | O | PHE- 488 | 3.3 | 157.03 | H-Bond (Ligand Donor) |
CG | CB | PHE- 488 | 4.39 | 0 | Hydrophobic |
C1' | CB | PHE- 488 | 4.43 | 0 | Hydrophobic |
C5' | CB | PHE- 488 | 4.02 | 0 | Hydrophobic |
O3' | OE1 | GLU- 512 | 3.47 | 156.68 | H-Bond (Ligand Donor) |
O2' | OE1 | GLU- 512 | 2.75 | 154.16 | H-Bond (Ligand Donor) |
N3 | N | LYS- 513 | 3.12 | 132.42 | H-Bond (Protein Donor) |
O2' | ND2 | ASN- 517 | 3.13 | 127.86 | H-Bond (Protein Donor) |
C5' | CB | PRO- 566 | 3.98 | 0 | Hydrophobic |