2.810 Å
X-ray
2014-01-28
| Name: | DNA methyltransferase |
|---|---|
| ID: | Q76KU6_TOBAC |
| AC: | Q76KU6 |
| Organism: | Nicotiana tabacum |
| Reign: | Eukaryota |
| TaxID: | 4097 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 74.636 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.578 | 772.875 |
| % Hydrophobic | % Polar |
|---|---|
| 40.17 | 59.83 |
| According to VolSite | |

| HET Code: | SFG |
|---|---|
| Formula: | C15H24N7O5 |
| Molecular weight: | 382.395 g/mol |
| DrugBank ID: | DB01910 |
| Buried Surface Area: | 66.78 % |
| Polar Surface area: | 214.71 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 9 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 2 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| -37.5157 | -58.181 | -29.8555 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O | N | PHE- 462 | 3.45 | 120.13 | H-Bond (Protein Donor) |
| OXT | N | PHE- 462 | 2.7 | 158 | H-Bond (Protein Donor) |
| N | O | PHE- 488 | 3.3 | 157.03 | H-Bond (Ligand Donor) |
| CG | CB | PHE- 488 | 4.39 | 0 | Hydrophobic |
| C1' | CB | PHE- 488 | 4.43 | 0 | Hydrophobic |
| C5' | CB | PHE- 488 | 4.02 | 0 | Hydrophobic |
| O3' | OE1 | GLU- 512 | 3.47 | 156.68 | H-Bond (Ligand Donor) |
| O2' | OE1 | GLU- 512 | 2.75 | 154.16 | H-Bond (Ligand Donor) |
| N3 | N | LYS- 513 | 3.12 | 132.42 | H-Bond (Protein Donor) |
| O2' | ND2 | ASN- 517 | 3.13 | 127.86 | H-Bond (Protein Donor) |
| C5' | CB | PRO- 566 | 3.98 | 0 | Hydrophobic |