scPDB - Distribution of Binding site Similarity values of 1nqu entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1nqu	RDL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1nqu	RDL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	1.000
1nqw	5YL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.597
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.578
1kyx	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.504
2a57	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.490
1w19	T4P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.487
2c9d	PHR	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.481
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.476
4kq6	DLZ	6,7-dimethyl-8-ribityllumazine synthase	/	0.475
1kyv	RBF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.468
1kyy	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.468
1w19	T1P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.468
1rvv	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.466
1ejb	INJ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.456
2c94	TSF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.453
2c9b	PUG	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.449
1w29	TS0	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.441