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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1nptNADGlyceraldehyde-3-phosphate dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/1.000
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.610
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.603
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.591
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.591
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.548
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.539
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.532
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.531
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.530
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.528
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.526
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.524
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.520
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.518
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.515
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.513
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.511
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.506
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.502
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.499
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.497
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.496
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.491
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.490
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.489
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.485
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.484
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.479
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.475
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.465
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.465