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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ngjANPHeat shock cognate 71 kDa protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1ngjANPHeat shock cognate 71 kDa protein/1.000
3hscADPHeat shock cognate 71 kDa protein/0.664
1ngcADPHeat shock cognate 71 kDa protein/0.609
1nghATPHeat shock cognate 71 kDa protein/0.566
1atsADPHeat shock cognate 71 kDa protein/0.565
2qwqADPHeat shock cognate 71 kDa protein/0.560
1ngiANPHeat shock cognate 71 kDa protein/0.547
1atrADPHeat shock cognate 71 kDa protein/0.527
2qwrANPHeat shock cognate 71 kDa protein/0.527
5f2rACP78 kDa glucose-regulated protein/0.516
2qwlADPHeat shock cognate 71 kDa protein/0.514
3ldlATP78 kDa glucose-regulated protein/0.512
3ldoANP78 kDa glucose-regulated protein/0.510
1ngeATPHeat shock cognate 71 kDa protein/0.507
2qwnADPHeat shock cognate 71 kDa protein/0.504
3fe1ADPHeat shock 70 kDa protein 6/0.491
5aqzSGVHeat shock 70 kDa protein 1A/0.475
1ngbADPHeat shock cognate 71 kDa protein/0.456
5eoxADPType 4 fimbrial biogenesis protein PilM/0.442