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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1n1pFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1n1pFADCholesterol oxidase1.1.3.61.000
1n4wFADCholesterol oxidase1.1.3.60.905
3b6dFAECholesterol oxidase1.1.3.60.873
4xxgFADCholesterol oxidase1.1.3.60.861
4rekFADCholesterol oxidase1.1.3.60.849
1ijhFADCholesterol oxidase1.1.3.60.842
4xwrFADCholesterol oxidase1.1.3.60.829
1b8sFADCholesterol oxidase1.1.3.60.826
3gyiFADCholesterol oxidase1.1.3.60.815
1n4vFADCholesterol oxidase1.1.3.60.792
3gyjFADCholesterol oxidase1.1.3.60.774
1b4vFADCholesterol oxidase1.1.3.60.766
1cboFADCholesterol oxidase1.1.3.60.695
2gewFADCholesterol oxidase1.1.3.60.684
3cnjFADCholesterol oxidase1.1.3.60.681
4u2tFADCholesterol oxidase1.1.3.60.675
3coxFADCholesterol oxidase1.1.3.60.563
4qi4FADCellobiose dehydrogenase/0.513
4qi7FADCellobiose dehydrogenase/0.496
3lshFADPyranose 2-oxidase/0.479
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.458
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.456
4tm3FADKtzI/0.456
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.456
4yntFDAGlucose oxidase, putative/0.453
4udqFAD5-(hydroxymethyl)furfural oxidase/0.452
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.451
4tm1FDAKtzI/0.449
2gv8FADThiol-specific monooxygenase1.14.130.448
1zemNADXylitol dehydrogenase/0.447
4rpgFADUDP-galactopyranose mutase5.4.99.90.447
3k4cFADPyranose 2-oxidase/0.446
4udrFAD5-(hydroxymethyl)furfural oxidase/0.446
4tm4FDAKtzI/0.445
4mihFADPyranose 2-oxidase1.1.3.100.440