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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ju2FAD(R)-mandelonitrile lyase 24.1.2.10

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ju2FAD(R)-mandelonitrile lyase 24.1.2.101.000
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.591
1cf3FADGlucose oxidase1.1.3.40.508
5hsaFASAlcohol oxidase 11.1.3.130.491
4yntFDAGlucose oxidase, putative/0.486
4udrFAD5-(hydroxymethyl)furfural oxidase/0.484
4qi4FADCellobiose dehydrogenase/0.479
4qi5FADCellobiose dehydrogenase/0.479
1galFADGlucose oxidase1.1.3.40.477
4udqFAD5-(hydroxymethyl)furfural oxidase/0.468
2igoFADPyranose 2-oxidase/0.467
3bg7FADPyranose 2-oxidase/0.463
1cboFADCholesterol oxidase1.1.3.60.462
4rekFADCholesterol oxidase1.1.3.60.458
1n4uFAECholesterol oxidase1.1.3.60.455
2ignFADPyranose 2-oxidase/0.453
1cc2FADCholesterol oxidase1.1.3.60.450
3b6zCO7Enoyl reductase LovC10.448
4qi7FADCellobiose dehydrogenase/0.447
1mxtFAECholesterol oxidase1.1.3.60.444
3q9tFAYUncharacterized protein/0.443
3gyiFADCholesterol oxidase1.1.3.60.441