sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1j0b | 5PA | Putative 1-aminocyclopropane-1-carboxylate deaminase | 3.5.99.7 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1j0b | 5PA | Putative 1-aminocyclopropane-1-carboxylate deaminase | 3.5.99.7 | 1.000 | |
| 4d9f | DCS | D-cysteine desulfhydrase | / | 0.521 | |
| 4d9e | LCS | D-cysteine desulfhydrase | / | 0.494 | |
| 4bfx | ZVX | Pantothenate kinase | 2.7.1.33 | 0.468 | |
| 4d96 | 5PA | D-cysteine desulfhydrase | / | 0.466 | |
| 3c1o | NAP | Eugenol synthase | / | 0.457 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.456 | |
| 1c7o | PPG | Hemolysin | / | 0.450 | |
| 2pnc | CLU | Primary amine oxidase, liver isozyme | / | 0.450 | |
| 5dp2 | NAP | CurF | / | 0.449 | |
| 4bft | ZVT | Pantothenate kinase | 2.7.1.33 | 0.447 | |
| 2zyn | BCD | Periplasmic binding protein | / | 0.445 | |
| 2vqb | NAP | Putative flavin-containing monooxygenase | / | 0.444 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.443 | |
| 4f1l | 0RY | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.443 | |
| 2ea4 | F79 | Methionine aminopeptidase 2 | / | 0.442 |