2.700 Å
X-ray
2002-11-12
Name: | Putative 1-aminocyclopropane-1-carboxylate deaminase |
---|---|
ID: | 1A1D_PYRHO |
AC: | O57809 |
Organism: | Pyrococcus horikoshii |
Reign: | Archaea |
TaxID: | 70601 |
EC Number: | 3.5.99.7 |
Chain Name: | Percentage of Residues within binding site |
---|---|
I | 100 % |
B-Factor: | 45.891 |
---|---|
Number of residues: | 38 |
Including | |
Standard Amino Acids: | 38 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.082 | 1272.375 |
% Hydrophobic | % Polar |
---|---|
53.85 | 46.15 |
According to VolSite |
HET Code: | 5PA |
---|---|
Formula: | C12H15N2O7P |
Molecular weight: | 330.230 g/mol |
DrugBank ID: | DB02849 |
Buried Surface Area: | 75.07 % |
Polar Surface area: | 172.09 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 3 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
46.981 | 105.183 | 97.5512 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2P | NZ | LYS- 54 | 3.18 | 122.32 | H-Bond (Protein Donor) |
O4P | NZ | LYS- 54 | 2.83 | 127.21 | H-Bond (Protein Donor) |
O2P | NZ | LYS- 54 | 3.18 | 0 | Ionic (Protein Cationic) |
C9 | CD | LYS- 54 | 4.16 | 0 | Hydrophobic |
O7 | OG | SER- 81 | 2.73 | 137.28 | H-Bond (Protein Donor) |
O8 | OG | SER- 81 | 2.82 | 149.65 | H-Bond (Protein Donor) |
O7 | N | ASN- 82 | 2.88 | 130.14 | H-Bond (Protein Donor) |
O7 | N | HIS- 83 | 3.16 | 163.07 | H-Bond (Protein Donor) |
C9 | CB | HIS- 83 | 3.31 | 0 | Hydrophobic |
O1P | N | GLY- 190 | 3.42 | 136.44 | H-Bond (Protein Donor) |
O3P | N | GLY- 190 | 3.3 | 161.48 | H-Bond (Protein Donor) |
O1P | N | GLY- 192 | 2.72 | 122.32 | H-Bond (Protein Donor) |
O2P | N | THR- 194 | 2.89 | 167.42 | H-Bond (Protein Donor) |
C2A | CD1 | TYR- 282 | 3.43 | 0 | Hydrophobic |
C8 | CZ | TYR- 282 | 3.98 | 0 | Hydrophobic |
C2A | CB | THR- 308 | 3.86 | 0 | Hydrophobic |