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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ijhFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ijhFADCholesterol oxidase1.1.3.61.000
1mxtFAECholesterol oxidase1.1.3.60.910
1n4vFADCholesterol oxidase1.1.3.60.865
4xwrFADCholesterol oxidase1.1.3.60.854
4xxgFADCholesterol oxidase1.1.3.60.840
1n4uFAECholesterol oxidase1.1.3.60.834
1b4vFADCholesterol oxidase1.1.3.60.824
4u2lSFDCholesterol oxidase1.1.3.60.821
3gyjFADCholesterol oxidase1.1.3.60.784
3gyiFADCholesterol oxidase1.1.3.60.773
4rekFADCholesterol oxidase1.1.3.60.773
1b8sFADCholesterol oxidase1.1.3.60.768
1cboFADCholesterol oxidase1.1.3.60.734
1cc2FADCholesterol oxidase1.1.3.60.716
4u2sFDACholesterol oxidase1.1.3.60.713
3cnjFADCholesterol oxidase1.1.3.60.669
3b6dFAECholesterol oxidase1.1.3.60.649
1n1pFADCholesterol oxidase1.1.3.60.628
1n4wFADCholesterol oxidase1.1.3.60.609
3coxFADCholesterol oxidase1.1.3.60.568
4u2tFADCholesterol oxidase1.1.3.60.559
4qi7FADCellobiose dehydrogenase/0.528
4qi4FADCellobiose dehydrogenase/0.525
4qi5FADCellobiose dehydrogenase/0.523
2gewFADCholesterol oxidase1.1.3.60.506
1galFADGlucose oxidase1.1.3.40.487
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.487
5hsaFASAlcohol oxidase 11.1.3.130.471
4yntFDAGlucose oxidase, putative/0.466
1cf3FADGlucose oxidase1.1.3.40.461
4udqFAD5-(hydroxymethyl)furfural oxidase/0.460
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.446