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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.121.000
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.637
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.626
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.604
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.589
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.575
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.568
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.556
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.553
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.540
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.540
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.536
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.535
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.533
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.530
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.530
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.529
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.529
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.528
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.528
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.521
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.521
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.519
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.517
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.513
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.507
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.500
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.493
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.486
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.482
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.476
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.468
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.443