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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.121.000
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.550
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.545
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.545
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.542
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.540
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.534
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.512
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.511
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.507
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.496
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.493
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.486
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.484
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.484
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.482
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.480
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.480
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.476
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.469
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.468
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.467
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.467
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.459
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.455
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.454
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.448
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.443
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.442
2cig1DGDihydrofolate reductase1.5.1.30.442