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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.21.000
1pt9TAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.661
1d4oNAPNAD(P) transhydrogenase, mitochondrial/0.652
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.20.652
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.20.573
2fr8NAPNAD(P) transhydrogenase subunit beta1.6.1.20.537
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.509
2fsvNAPNAD(P) transhydrogenase subunit beta1.6.1.20.507
4j16NAPNAD(P) transhydrogenase subunit beta/0.502
4j1tNAPNAD(P) transhydrogenase subunit beta/0.494