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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1b4vFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1b4vFADCholesterol oxidase1.1.3.61.000
1n4vFADCholesterol oxidase1.1.3.60.854
1ijhFADCholesterol oxidase1.1.3.60.834
1mxtFAECholesterol oxidase1.1.3.60.813
1cc2FADCholesterol oxidase1.1.3.60.803
4u2lSFDCholesterol oxidase1.1.3.60.796
4xwrFADCholesterol oxidase1.1.3.60.791
4u2sFDACholesterol oxidase1.1.3.60.770
4xxgFADCholesterol oxidase1.1.3.60.767
1n4uFAECholesterol oxidase1.1.3.60.763
1cboFADCholesterol oxidase1.1.3.60.745
1b8sFADCholesterol oxidase1.1.3.60.739
3gyjFADCholesterol oxidase1.1.3.60.710
4rekFADCholesterol oxidase1.1.3.60.706
3gyiFADCholesterol oxidase1.1.3.60.703
3cnjFADCholesterol oxidase1.1.3.60.662
1n1pFADCholesterol oxidase1.1.3.60.588
3coxFADCholesterol oxidase1.1.3.60.586
1n4wFADCholesterol oxidase1.1.3.60.557
4qi4FADCellobiose dehydrogenase/0.526
4qi5FADCellobiose dehydrogenase/0.525
2gewFADCholesterol oxidase1.1.3.60.519
4qi7FADCellobiose dehydrogenase/0.510
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.496
4udqFAD5-(hydroxymethyl)furfural oxidase/0.480
5hsaFASAlcohol oxidase 11.1.3.130.478
1galFADGlucose oxidase1.1.3.40.471
4yntFDAGlucose oxidase, putative/0.467
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.458
1cf3FADGlucose oxidase1.1.3.40.454
4udrFAD5-(hydroxymethyl)furfural oxidase/0.445