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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1a4lDCFAdenosine deaminase3.5.4.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1a4lDCFAdenosine deaminase3.5.4.41.000
2adaHPRAdenosine deaminase3.5.4.40.618
1fkxPRHAdenosine deaminase3.5.4.40.591
1uioHPRAdenosine deaminase3.5.4.40.588
1fkwPURAdenosine deaminase3.5.4.40.574
1o5rFR9Adenosine deaminase3.5.4.40.560
2z7gEH9Adenosine deaminase3.5.4.40.550
1ndyFR3Adenosine deaminase3.5.4.40.539
1v79FR7Adenosine deaminase3.5.4.40.539
1wxyFRKAdenosine deaminase3.5.4.40.521
1qxlFR8Adenosine deaminase3.5.4.40.517
1umlFR4Adenosine deaminase3.5.4.40.516
1ndzFR5Adenosine deaminase3.5.4.40.510
1v7aFRCAdenosine deaminase3.5.4.40.480
4tx9AMZPhosphoribosyl isomerase A/0.480
1h35R01Squalene--hopene cyclase4.2.1.1290.469
5dn1AMZPhosphoribosyl isomerase A5.3.1.160.467
2v3wTPPBenzoylformate decarboxylase4.1.1.70.465
1dcyI3NPhospholipase A2, membrane associated/0.459
1db56INPhospholipase A2, membrane associated/0.458
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.457
4imfSI3N-acetylneuraminate lyase/0.456
4qerSTLPhospholipase A2 VRV-PL-VIIIa/0.456
3wtkTH4Acetylcholine-binding protein/0.452
4ddrMMVDihydrofolate reductase1.5.1.30.451
4ej4EJ4Delta-type opioid receptor/0.450
1h36R88Squalene--hopene cyclase4.2.1.1290.449
3nmnPYVAbscisic acid receptor PYL1/0.449
3nmpPYVAbscisic acid receptor PYL2/0.446
1lkeDOGBilin-binding protein/0.445
1uwhBAXSerine/threonine-protein kinase B-raf2.7.11.10.444
2wqoVGKSerine/threonine-protein kinase Nek22.7.11.10.444
2pmlANPUncharacterized protein/0.443
2vz0D64Pteridine reductase/0.443
3nmhPYVAbscisic acid receptor PYL2/0.443
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.443
1ygkRRCPyridoxal kinase2.7.1.350.442
2j7dGI1Beta-glucosidase A3.2.1.210.442
1jtvTESEstradiol 17-beta-dehydrogenase 11.1.1.620.441
2bfaCB3Pteridine reductase 11.5.1.330.440