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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5std UNN Scytalone dehydratase 4.2.1.94

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5std UNNScytalone dehydratase 4.2.1.94 1.238
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1std BFSScytalone dehydratase 4.2.1.94 0.741
4std BFSScytalone dehydratase 4.2.1.94 0.728
3std MQ0Scytalone dehydratase 4.2.1.94 0.677
4e5f 0N7Polymerase acidic protein / 0.660
7std CRPScytalone dehydratase 4.2.1.94 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.652
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.651