sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5kf2 | COA | Predicted acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 5kf2 | COA | Predicted acetyltransferase | / | 0.963 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.913 | |
| 5kf9 | COA | Predicted acetyltransferase | / | 0.878 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.863 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.767 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.766 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.761 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.738 | |
| 4kub | COA | Uncharacterized protein | / | 0.737 | |
| 1pua | COA | HAT A1 | / | 0.736 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.736 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.735 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.733 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.730 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.730 | |
| 1bo4 | COA | Aminoglycoside-(3)-N-acetyltransferase | / | 0.726 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.725 | |
| 1qsn | COA | HAT A1 | / | 0.725 | |
| 1qsr | ACO | HAT A1 | / | 0.717 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.716 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.711 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.711 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.710 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.709 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.708 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.707 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.704 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.702 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.700 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.698 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.696 | |
| 1pu9 | COA | HAT A1 | / | 0.696 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.692 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.690 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.688 | |
| 1m4d | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.687 | |
| 3s6f | COA | Uncharacterized protein | / | 0.687 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.687 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.686 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.684 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.684 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.680 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.679 | |
| 2jev | NHQ | Diamine acetyltransferase 1 | / | 0.679 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.679 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.678 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.676 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.675 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.674 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.674 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.671 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.670 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.670 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.670 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.669 | |
| 3tfy | COA | N-alpha-acetyltransferase 50 | 2.3.1 | 0.668 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.667 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.666 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.661 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.661 | |
| 4cry | ACO | PanD regulatory factor | / | 0.659 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.657 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.656 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.655 | |
| 1s7n | COA | Acetyl transferase | / | 0.654 | |
| 1t3z | CAO | Formyl-CoA:oxalate CoA-transferase | / | 0.653 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.653 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.653 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.652 | |
| 3r1k | COA | N-acetyltransferase Eis | / | 0.651 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.650 |