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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jqh CAU Beta-2 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5jqh CAUBeta-2 adrenergic receptor / 1.157
5d6l CAUBeta-2 adrenergic receptor / 0.979
5d5a CAUBeta-2 adrenergic receptor / 0.971
5d5b CAUBeta-2 adrenergic receptor / 0.960
2rh1 CAUBeta-2 adrenergic receptor / 0.959
2vt4 P32Beta-1 adrenergic receptor / 0.941
4bvn P32Beta-1 adrenergic receptor / 0.924
2ycw CAUBeta-1 adrenergic receptor / 0.916
4amj CVDBeta-1 adrenergic receptor / 0.903
2ycy P32Beta-1 adrenergic receptor / 0.903
2ycz I32Beta-1 adrenergic receptor / 0.890
4gbr CAUBeta-2 adrenergic receptor / 0.872
3nya JTZBeta-2 adrenergic receptor / 0.865
3ny9 JSZBeta-2 adrenergic receptor / 0.857
5a8e XTKBeta-1 adrenergic receptor / 0.839
2ycx P32Beta-1 adrenergic receptor / 0.769
3ny8 JRZBeta-2 adrenergic receptor / 0.764
4ami G90Beta-1 adrenergic receptor / 0.762
4ldl XQCBeta-2 adrenergic receptor / 0.758
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3d4s TIMBeta-2 adrenergic receptor / 0.727
2y03 5FWBeta-1 adrenergic receptor / 0.718
5f8u P32Beta-1 adrenergic receptor / 0.711
2y02 WHJBeta-1 adrenergic receptor / 0.695
4lde P0GBeta-2 adrenergic receptor / 0.685
4e5f 0N7Polymerase acidic protein / 0.660
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.654