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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jj0 SAM Histone-lysine N-methyltransferase EHMT2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5jj0 SAMHistone-lysine N-methyltransferase EHMT2 / 1.034
5jhn SAMHistone-lysine N-methyltransferase EHMT2 / 0.994
5jin SAMHistone-lysine N-methyltransferase EHMT2 / 0.991
2rfi SAHHistone-lysine N-methyltransferase EHMT1 / 0.893
4ypa SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.890
3hna SAHHistone-lysine N-methyltransferase EHMT1 / 0.865
3fpd SAHHistone-lysine N-methyltransferase EHMT1 / 0.858
4ynm SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.855
4h12 SAHHistone-lysine N-methyltransferase SETD2 2.1.1.43 0.839
4ynp SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.839
4qen SAHHistone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 2.1.1.43 0.834
2r3a SAMHistone-lysine N-methyltransferase SUV39H2 2.1.1.43 0.833
2igq SAHHistone-lysine N-methyltransferase EHMT1 / 0.821
4ypu SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.816
3kmt SAHHistone H3K27 methylase / 0.813
1n6c SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.810
3tg4 SAMN-lysine methyltransferase SMYD2 / 0.801
4j83 SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.801
3swc SAHHistone-lysine N-methyltransferase EHMT1 / 0.798
3qwp SAMHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.792
3m53 SAHHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.786
5czy SAMEukaryotic huntingtin interacting protein B / 0.786
4z4p SAHHistone-lysine N-methyltransferase 2D 2.1.1.43 0.784
2o8j SAHHistone-lysine N-methyltransferase EHMT2 / 0.777
5f59 SAHHistone-lysine N-methyltransferase 2C 2.1.1.43 0.765
1p0y SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.757
2h23 SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.756
1ozv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.740
3mo0 SAHHistone-lysine N-methyltransferase EHMT1 / 0.738
1mlv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.735
2bqz SAHN-lysine methyltransferase KMT5A / 0.730
3ru0 SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.725
3cbp SFGHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.722
4bup SAMHistone-lysine N-methyltransferase KMT5B 2.1.1.43 0.711
3ooi SAMHistone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific 2.1.1.43 0.706
3s8p SAMHistone-lysine N-methyltransferase KMT5B 2.1.1.43 0.706
4au7 SAHHistone-lysine N-methyltransferase KMT5C 2.1.1.43 0.698
5ex0 SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.691
2h21 SAMRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.688
4o6f SAHN-lysine methyltransferase SMYD2 / 0.688
3n71 SFGHistone-lysine N-methyltransferase Smyd1 / 0.669
4ype SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.669
4o30 SAHProbable Histone-lysine N-methyltransferase ATXR5 2.1.1.43 0.665
3pdn SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.659
2h2j SFGRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.654
3vuz K15Histone-lysine N-methyltransferase SETD7 2.1.1.43 0.654