2.500 Å
X-ray
2012-07-10
Name: | Histone-lysine N-methyltransferase SETD7 |
---|---|
ID: | SETD7_HUMAN |
AC: | Q8WTS6 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.1.1.43 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 57.887 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.251 | 627.750 |
% Hydrophobic | % Polar |
---|---|
28.49 | 71.51 |
According to VolSite |
HET Code: | K15 |
---|---|
Formula: | C20H34N7O5 |
Molecular weight: | 452.528 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.59 % |
Polar Surface area: | 191.52 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 2 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 12 |
X | Y | Z |
---|---|---|
-38.7489 | 0.630125 | -20.8114 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N | O | ALA- 226 | 2.92 | 150.43 | H-Bond (Ligand Donor) |
O | N | GLU- 228 | 3.07 | 141.58 | H-Bond (Protein Donor) |
C12 | CE1 | TYR- 245 | 3.87 | 0 | Hydrophobic |
C13 | CZ | TYR- 245 | 3.95 | 0 | Hydrophobic |
OXT | ND2 | ASN- 282 | 3.04 | 134.7 | H-Bond (Protein Donor) |
O | NZ | LYS- 294 | 3.18 | 136.49 | H-Bond (Protein Donor) |
OXT | NZ | LYS- 294 | 3.02 | 162.88 | H-Bond (Protein Donor) |
O | NZ | LYS- 294 | 3.18 | 0 | Ionic (Protein Cationic) |
OXT | NZ | LYS- 294 | 3.02 | 0 | Ionic (Protein Cationic) |
CB | CD | LYS- 294 | 4.44 | 0 | Hydrophobic |
N | OD1 | ASN- 296 | 2.77 | 154.2 | H-Bond (Ligand Donor) |
N7 | N | HIS- 297 | 2.98 | 172.32 | H-Bond (Protein Donor) |
N6 | O | HIS- 297 | 2.88 | 140.69 | H-Bond (Ligand Donor) |
C14 | CZ | TYR- 305 | 4.36 | 0 | Hydrophobic |
C11 | CZ | TYR- 335 | 3.57 | 0 | Hydrophobic |
C14 | CD2 | TYR- 335 | 3.71 | 0 | Hydrophobic |
C15 | CZ | TYR- 337 | 4.21 | 0 | Hydrophobic |
C2' | CE2 | TRP- 352 | 3.8 | 0 | Hydrophobic |
C3' | CZ2 | TRP- 352 | 3.6 | 0 | Hydrophobic |