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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5i2f BS5 Histidine triad nucleotide-binding protein 1 3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5i2f BS5Histidine triad nucleotide-binding protein 1 3 0.974
4eqe KAAHistidine triad nucleotide-binding protein 1 3 0.830
4eqg A5AHistidine triad nucleotide-binding protein 1 3 0.824
3n1s 5GPPurine nucleoside phosphoramidase / 0.801
4egu 5GPPutative histidine triad (HIT) protein / 0.789
1rzy 5ASHistidine triad nucleotide-binding protein 1 3 0.754
3qgz ADNHistidine triad nucleotide-binding protein 1 3 0.717
3n1t 5GPPurine nucleoside phosphoramidase / 0.695
2h39 ADQADP-glucose phosphorylase / 0.690
3oxk 5GPHistidine triad nucleotide-binding protein 3 0.689
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.665
4xba 5GPAprataxin-like protein 3 0.656
1st0 GTGm7GpppX diphosphatase 3.6.1.59 0.650