1.100 Å
X-ray
2011-01-25
Name: | Histidine triad nucleotide-binding protein 1 |
---|---|
ID: | HINT1_RABIT |
AC: | P80912 |
Organism: | Oryctolagus cuniculus |
Reign: | Eukaryota |
TaxID: | 9986 |
EC Number: | 3 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 14.517 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.629 | 327.375 |
% Hydrophobic | % Polar |
---|---|
61.86 | 38.14 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 55.25 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
8.24368 | 10.6281 | 55.3425 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CZ | PHE- 19 | 4.37 | 0 | Hydrophobic |
C5' | CZ | PHE- 19 | 3.98 | 0 | Hydrophobic |
O3' | OD2 | ASP- 43 | 2.58 | 163.5 | H-Bond (Ligand Donor) |
O2' | OD1 | ASP- 43 | 2.83 | 169.86 | H-Bond (Ligand Donor) |
N3 | N | ILE- 44 | 3.21 | 153.76 | H-Bond (Protein Donor) |
C2' | CG2 | ILE- 44 | 4.18 | 0 | Hydrophobic |
C4' | CD1 | LEU- 53 | 4 | 0 | Hydrophobic |
C1' | CD1 | LEU- 53 | 4.07 | 0 | Hydrophobic |
C5' | CG2 | VAL- 108 | 4.21 | 0 | Hydrophobic |
O5' | NE2 | HIS- 112 | 2.52 | 136.36 | H-Bond (Ligand Donor) |