scPDB - Distribution of Binding mode Similarity values of 5h8t entry / Site 1

Distribution of Interaction pattern similarity measured by Grim

You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
5h8t	RTL	Retinol-binding protein 1

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
5h8t	RTL	Retinol-binding protein 1	/	1.075
5hbs	RTL	Retinol-binding protein 1	/	0.940
1crb	RTL	Retinol-binding protein 1	/	0.851
4e5l	DBH	Polymerase acidic protein	/	0.755
4e5i	0N9	Polymerase acidic protein	/	0.744
1opb	RET	Retinol-binding protein 2	/	0.702
4qzu	RTL	Retinol-binding protein 2	/	0.690
2d09	FLV	Biflaviolin synthase CYP158A2	/	0.672
1kqw	RTL	Cellular retinol-binding protein type II	/	0.668
1aqb	RTL	Retinol-binding protein 4	/	0.660
4e5f	0N7	Polymerase acidic protein	/	0.660
4j6b	PLO	Cytochrome P450 monooxygenase	/	0.657