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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5g53 NEC Adenosine receptor A2a

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5g53 NECAdenosine receptor A2a / 1.022
4uhr NGIAdenosine receptor A2a / 0.891
3qak UKAAdenosine receptor A2a / 0.837
2ydv NECAdenosine receptor A2a / 0.833
4ug2 NGIAdenosine receptor A2a / 0.821
2ydo ADNAdenosine receptor A2a / 0.774
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3bwj ARXcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.689
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.686
3tw6 ADPPyruvate carboxylase / 0.678
2zdg ADPD-alanine--D-alanine ligase / 0.676
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.669
4e5f 0N7Polymerase acidic protein / 0.660
2p0a ANPSynapsin-3 / 0.659
5hq8 SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.659
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.658
3vqv ANPPyrrolysine--tRNA ligase / 0.658
4s1h ADPPyridoxal kinase, putative / 0.658
1j7u ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.653
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.652
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.650