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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fx2 FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fx2 FMNFlavodoxin / 1.041
1c7f FMNFlavodoxin / 0.796
4fx2 FMNFlavodoxin / 0.773
1wsb FMNFlavodoxin / 0.767
1aku FMNFlavodoxin / 0.761
1j8q FMNFlavodoxin / 0.760
1xyv FMNFlavodoxin / 0.757
2fx2 FMNFlavodoxin / 0.747
1azl FMNFlavodoxin / 0.744
1akr FMNFlavodoxin / 0.743
1akw FMNFlavodoxin / 0.742
3f90 FMNFlavodoxin / 0.737
2v5v FMNFlavodoxin / 0.728
5tgz FMNCannabinoid receptor 1 / 0.728
1czn FMNFlavodoxin / 0.727
1j9g FMNFlavodoxin / 0.722
3f6s FMNFlavodoxin / 0.719
1fx1 FMNFlavodoxin / 0.713
3kap FMNFlavodoxin / 0.711
1ofv FMNFlavodoxin / 0.706
2bf4 FMNNADPH--cytochrome P450 reductase / 0.706
3f6r FMNFlavodoxin / 0.706
1ahn FMNFlavodoxin 1 / 0.696
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.695
2ohh FMNType A flavoprotein FprA 1 0.694
1xyy FMNFlavodoxin / 0.691
2fcr FMNFlavodoxin / 0.688
3qe2 FMNNADPH--cytochrome P450 reductase / 0.685
4oxx FMNCindoxin / 0.683
4bmp FMNProtein NrdI / 0.679
2v5u FMNFlavodoxin / 0.677
3esy FMNFlavodoxin / 0.677
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.668
3esz FMNFlavodoxin / 0.668
1fue FMNFlavodoxin / 0.665
2w5u FMNFlavodoxin / 0.665
5xra FMNCannabinoid receptor 1 / 0.663
3ojw FMNNADPH--cytochrome P450 reductase / 0.662
1amo FMNNADPH--cytochrome P450 reductase / 0.660
3n3a FMNProtein NrdI / 0.658
4bmo FMNProtein NrdI / 0.655
3ojx FMNNADPH--cytochrome P450 reductase / 0.652