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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dfc EAM Bromodomain-containing protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5dfc EAMBromodomain-containing protein 2 / 0.928
4f3i 0S6Bromodomain-containing protein 4 / 0.774
2yek EAMBromodomain-containing protein 2 / 0.767
2yel WSHBromodomain-containing protein 4 / 0.705
4qzs JQ1Bromodomain-containing protein 4 / 0.696
4gpj 0Q1Bromodomain-containing protein 4 / 0.695
4c66 H4CBromodomain-containing protein 4 / 0.693
2ydw WSHBromodomain-containing protein 2 / 0.688
4lrg 1XBBromodomain-containing protein 4 / 0.680
4bjx 73BBromodomain-containing protein 4 / 0.679
4j0s 1H3Bromodomain-containing protein 4 / 0.679
2yem WSHBromodomain-containing protein 4 / 0.674
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
4c67 L5SBromodomain-containing protein 4 / 0.658