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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5d5b CAU Beta-2 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5d5b CAUBeta-2 adrenergic receptor / 1.129
5d5a CAUBeta-2 adrenergic receptor / 1.018
5d6l CAUBeta-2 adrenergic receptor / 1.018
2rh1 CAUBeta-2 adrenergic receptor / 1.005
5jqh CAUBeta-2 adrenergic receptor / 0.960
4amj CVDBeta-1 adrenergic receptor / 0.907
2ycy P32Beta-1 adrenergic receptor / 0.900
3ny9 JSZBeta-2 adrenergic receptor / 0.882
5a8e XTKBeta-1 adrenergic receptor / 0.873
2ycz I32Beta-1 adrenergic receptor / 0.841
2vt4 P32Beta-1 adrenergic receptor / 0.832
3nya JTZBeta-2 adrenergic receptor / 0.826
4bvn P32Beta-1 adrenergic receptor / 0.812
4gbr CAUBeta-2 adrenergic receptor / 0.811
2ycw CAUBeta-1 adrenergic receptor / 0.802
4ldl XQCBeta-2 adrenergic receptor / 0.781
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4lde P0GBeta-2 adrenergic receptor / 0.715
2ycx P32Beta-1 adrenergic receptor / 0.701
5f8u P32Beta-1 adrenergic receptor / 0.700
2y02 WHJBeta-1 adrenergic receptor / 0.699
3ny8 JRZBeta-2 adrenergic receptor / 0.689
3sn6 P0GBeta-2 adrenergic receptor / 0.680
4ami G90Beta-1 adrenergic receptor / 0.672
3d4s TIMBeta-2 adrenergic receptor / 0.669
4e5f 0N7Polymerase acidic protein / 0.660
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.654