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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cyq T27 Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cyq T27Gag-Pol polyprotein 2.7.7.49 1.034
4ifv T27Gag-Pol polyprotein 2.7.7.49 1.027
4g1q T27Gag-Pol polyprotein 2.7.7.49 0.975
2zd1 T27Gag-Pol polyprotein 2.7.7.49 0.967
4id5 T27Gag-Pol polyprotein 2.7.7.49 0.964
4kfb T27Gag-Pol polyprotein 2.7.7.49 0.962
4ig3 T27Gag-Pol polyprotein 2.7.7.49 0.944
3bgr T27Gag-Pol polyprotein 2.7.7.49 0.918
3qlh T27Gag-Pol polyprotein 2.7.7.49 0.852
4i2p G73Gag-Pol polyprotein 2.7.7.49 0.826
3meg T27Gag-Pol polyprotein 2.7.7.49 0.808
1s6q TPBGag-Pol polyprotein 2.7.7.49 0.795
3med 65BGag-Pol polyprotein 2.7.7.49 0.790
3mec 65BGag-Pol polyprotein 2.7.7.49 0.789
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.786
3nbp JGZGag-Pol polyprotein 2.7.7.49 0.750
3mee T27Gag-Pol polyprotein 2.7.7.49 0.748
4e5i 0N9Polymerase acidic protein / 0.744
1s9e ADBGag-Pol polyprotein 2.7.7.49 0.725
4i2q 1BTGag-Pol polyprotein 2.7.7.49 0.696
4e5f 0N7Polymerase acidic protein / 0.660