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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a89 FMN Riboflavin biosynthesis protein RibF 2.7.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 1.322
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 1.237
1nb9 RBFRiboflavin kinase 2.7.1.26 0.774
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.699
2v18 FMNDodecin / 0.697
5j4e FMNSensory box protein / 0.693
5i39 FADL-amino acid deaminase / 0.691
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.686
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.682
3l67 FMNXenobiotic reductase / 0.681
4gde FDAUDP-galactopyranose mutase / 0.679
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.679
5af7 FADAcyl-CoA dehydrogenase / 0.679
1vhn FMNtRNA-dihydrouridine synthase / 0.678
4u8m FDAUDP-galactopyranose mutase / 0.678
1ofv FMNFlavodoxin / 0.674
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.674
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.673
3e39 FMNNitroreductase / 0.672
4j8p FMNFlavodoxin / 0.672
5j3w FMNSensory box protein / 0.671
1akr FMNFlavodoxin / 0.670
4u8i FDAUDP-galactopyranose mutase / 0.670
1azl FMNFlavodoxin / 0.669
3fg2 FADPutative rubredoxin reductase / 0.669
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.668
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.668
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.667
2dvl FADAcyl-CoA dehydrogenase / 0.667
2pg0 FADAcyl-CoA dehydrogenase / 0.667
3rpe FADPutative modulator of drug activity / 0.667
4u8p FDAUDP-galactopyranose mutase / 0.667
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.667
3f90 FMNFlavodoxin / 0.664
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.663
2byc FMNBlue-light receptor of the BLUF-family / 0.663
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.663
3aty FMNProstaglandin F2a synthase / 0.662
2yvf FADFerredoxin reductase / 0.661
4h4s FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.661
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.661
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.660
5jsc FADPutative acyl-CoA dehydrogenase / 0.659
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.658
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.658
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.657
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.656
1cc2 FADCholesterol oxidase 1.1.3.6 0.655
3pft FMNFlavin reductase / 0.655
1akw FMNFlavodoxin / 0.654
2v5u FMNFlavodoxin / 0.654
3ge6 FMNNitroreductase / 0.654
3n3b FMNProtein NrdI / 0.654
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.654
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.652
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.651
4u8l FDAUDP-galactopyranose mutase / 0.651
4wx1 FDAUDP-galactopyranose mutase / 0.651
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.650