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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zn7 DES Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4zn7 DESEstrogen receptor / 1.228
3erd DESEstrogen receptor / 1.024
4pp6 STLEstrogen receptor / 0.783
4dma 0L8Estrogen receptor / 0.774
2jf9 OHTEstrogen receptor / 0.764
1s9p DESEstrogen-related receptor gamma / 0.756
2q70 DC8Estrogen receptor / 0.754
4e5i 0N9Polymerase acidic protein / 0.744
4iv4 1GSEstrogen receptor / 0.742
2qgt EEDEstrogen receptor / 0.736
1yye 196Estrogen receptor beta / 0.723
1x7b 041Estrogen receptor beta / 0.690
1zaf 789Estrogen receptor beta / 0.681
1tz8 DESTransthyretin / 0.676
2fai 459Estrogen receptor / 0.673
4iw6 1GUEstrogen receptor / 0.673
4ivw 1GJEstrogen receptor / 0.672
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
1gwr ESTEstrogen receptor / 0.658
1xqc AEJEstrogen receptor / 0.658
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
2qe4 JJ3Estrogen receptor / 0.650