Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ydq HFG Proline--tRNA ligase 6.1.1.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ydq HFGProline--tRNA ligase 6.1.1.15 1.102
4q15 HFGProline--tRNA ligase 6.1.1.15 0.931
4olf HFGProline--tRNA ligase 6.1.1.15 0.804
4k88 HFGBifunctional glutamate/proline--tRNA ligase 6.1.1.15 0.800
4e5l DBHPolymerase acidic protein / 0.673
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5f 0N7Polymerase acidic protein / 0.658