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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4x81 MVI Mycinamicin III 3''-O-methyltransferase 2.1.1.237

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4x81 MVIMycinamicin III 3''-O-methyltransferase 2.1.1.237 1.045
4x7v MIVMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.874
4x7z ZM3Mycinamicin III 3''-O-methyltransferase 2.1.1.237 0.858
4x7w MVIMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.857
4x7u ZM3Mycinamicin III 3''-O-methyltransferase 2.1.1.237 0.693
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.660
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.660
4z17 PEPEnolase / 0.660