Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4wzy ATP Maltokinase 2.7.1.175

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4wzy ATPMaltokinase 2.7.1.175 0.850
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.701
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.701
3akl ANPSerine/threonine-protein kinase CtkA 2.7.11.1 0.694
4pl3 ADPSerine/threonine-protein kinase/endoribonuclease IRE1 2.7.11.1 0.688
5ckw ANPUncharacterized protein / 0.663
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.661
3b2t M33Fibroblast growth factor receptor 2 / 0.659
3vjn ANPEpidermal growth factor receptor 2.7.10.1 0.657
3q5i ANPProtein kinase, putative / 0.655
4o4e ATPKinase / 0.654
2olc ADPMethylthioribose kinase 2.7.1.100 0.652
3akk ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.651
3uim ANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1 0.651
5cno ANPEpidermal growth factor receptor 2.7.10.1 0.651
1ol5 ADPAurora kinase A 2.7.11.1 0.650
1ztf XYARIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.650