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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4usq FAD Pyridine nucleotide-disulfide oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4usq FADPyridine nucleotide-disulfide oxidoreductase / 1.227
4usr FADMonooxygenase / 0.925
4c5o FADPutative monooxygenase / 0.813
5j60 FADThioredoxin reductase / 0.704
4tlz FADKtzI / 0.698
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.687
3cnt FADPolyamine oxidase FMS1 / 0.679
4ccr FADThioredoxin reductase / 0.676
2q0l FADThioredoxin reductase 1.8.1.9 0.674
4nzh FADL-ornithine N(5)-monooxygenase / 0.673
2yg5 FADPutrescine oxidase / 0.672
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.671
1ger FADGlutathione reductase 1.8.1.7 0.669
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.668
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.668
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.668
3kpk FADSulfide-quinone reductase / 0.665
3gd3 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.664
2yg7 FADPutrescine oxidase / 0.662
3t2z FADSulfide-quinone reductase / 0.661
3ish FADThioredoxin reductase 1.8.1.9 0.660
4a99 FADTetX family tetracycline inactivation enzyme / 0.660
4fwf FADLysine-specific histone demethylase 1B 1 0.658
4o5u FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.658
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.657
2q0k FADThioredoxin reductase 1.8.1.9 0.656
4b64 FADL-ornithine N(5)-monooxygenase / 0.656
4b69 FADL-ornithine N(5)-monooxygenase / 0.656
1cf3 FADGlucose oxidase 1.1.3.4 0.655
2cfy FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.655
3nn6 FB06-hydroxy-L-nicotine oxidase / 0.655
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.655
4tm1 FDAKtzI / 0.655
3ute FADUDP-galactopyranose mutase / 0.654
1c0l FADD-amino-acid oxidase 1.4.3.3 0.653
2b9y FADPutative aminooxidase / 0.653
2hko FADLysine-specific histone demethylase 1A 1 0.653
2gr0 FADFerredoxin reductase / 0.652
3cox FADCholesterol oxidase 1.1.3.6 0.651
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.650
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.650