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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rts SAM DNA adenine methylase 2.1.1.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rts SAMDNA adenine methylase 2.1.1.72 0.953
4rtr SAMDNA adenine methylase 2.1.1.72 0.902
4rtq SAHDNA adenine methylase 2.1.1.72 0.849
4gol SA8DNA adenine methylase 2.1.1.72 0.813
2ore SAHDNA adenine methylase 2.1.1.72 0.796
4rtk SAHDNA adenine methylase 2.1.1.72 0.759
4rtm SAMDNA adenine methylase 2.1.1.72 0.756
4rtn SAHDNA adenine methylase 2.1.1.72 0.750
4rto SFGDNA adenine methylase 2.1.1.72 0.747
2g1p SAHDNA adenine methylase 2.1.1.72 0.742
1nw6 SFGModification methylase RsrI 2.1.1.72 0.738
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.727
1eg2 MTAModification methylase RsrI 2.1.1.72 0.721
4gbe SAHDNA adenine methylase 2.1.1.72 0.717
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.716
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.708
4rtp SAMDNA adenine methylase 2.1.1.72 0.708
4rtj SFGDNA adenine methylase 2.1.1.72 0.705
1yf3 SAHDNA adenine methylase / 0.694
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.691
3ldg SAHUncharacterized protein / 0.688
2yxl SFG450aa long hypothetical fmu protein / 0.687
2yx1 SFGtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.683
3axs SFGtRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase / 0.683
1boo SAHModification methylase PvuII 2.1.1.113 0.681
3v97 SAHRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.680
10mh SAHModification methylase HhaI 2.1.1.37 0.677
1g60 SAMModification methylase MboII 2.1.1.72 0.676
1uay ADNOxidoreductase / 0.672
1nw5 SAMModification methylase RsrI 2.1.1.72 0.671
1skm SAHModification methylase HhaI 2.1.1.37 0.671
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.671
4mb2 ATPUncharacterized protein / 0.671
2zcj SAHModification methylase HhaI 2.1.1.37 0.670
2c7q SAHModification methylase HhaI 2.1.1.37 0.669
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.669
1qaq SFGrRNA adenine N-6-methyltransferase 2.1.1.184 0.667
2hmv ADPKtr system potassium uptake protein A / 0.666
3s1s SAHRestriction endonuclease BpuSI / 0.666
2np7 NEAModification methylase TaqI 2.1.1.72 0.665
2eju SAHtRNA (guanine(26)-N(2))-dimethyltransferase / 0.664
3tm4 SAMUncharacterized protein / 0.663
2i9k SAHModification methylase HhaI 2.1.1.37 0.660
2uyh SAHModification methylase HhaI 2.1.1.37 0.653
4rtl SFGDNA adenine methylase 2.1.1.72 0.653
3tlj SAHUncharacterized protein / 0.651
4c03 SFGProtein arginine N-methyltransferase 6 / 0.651
5dwq SFGHistone-arginine methyltransferase CARM1 / 0.650