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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rqv ATP 3-phosphoinositide-dependent protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rqv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.848
4rrv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.787
4xx9 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.775
4rqk ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.774
3hrc ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.760
3hrf ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.754
2biy ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.740
1h1w ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.726
4ct1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.721
5ack ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.716
4aw0 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.689
4ct2 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.675
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.656
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.654
4wbb ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650