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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qvb F42 F420H(2)-dependent reductase Rv1155 1.4.3.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4qvb F42F420H(2)-dependent reductase Rv1155 1.4.3.5 0.926
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.697
2gpj FADSiderophore-interacting protein / 0.676
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.663
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.663
3fpk FADFerredoxin-NADP reductase / 0.661
4e5i 0N9Polymerase acidic protein / 0.660
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.655
2ptf FMNUncharacterized protein MTH_863 / 0.653
2pia FMNPhthalate dioxygenase reductase / 0.652
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.650