Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4q8p CKR Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4q8p CKRQueuine tRNA-ribosyltransferase 2.4.2.29 0.971
3gc4 AAQQueuine tRNA-ribosyltransferase 2.4.2.29 0.878
4fsa 0V3Queuine tRNA-ribosyltransferase 2.4.2.29 0.844
4giy 0WYQueuine tRNA-ribosyltransferase 2.4.2.29 0.829
3gc5 2MQQueuine tRNA-ribosyltransferase 2.4.2.29 0.826
2bbf 344Queuine tRNA-ribosyltransferase 2.4.2.29 0.819
2qzr S79Queuine tRNA-ribosyltransferase 2.4.2.29 0.793
1y5w NEZQueuine tRNA-ribosyltransferase 2.4.2.29 0.791
1y5x E89Queuine tRNA-ribosyltransferase 2.4.2.29 0.785
1r5y DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.778
3ge7 AFQQueuine tRNA-ribosyltransferase 2.4.2.29 0.778
4fr1 0V2Queuine tRNA-ribosyltransferase 2.4.2.29 0.773
4gh1 0WXQueuine tRNA-ribosyltransferase 2.4.2.29 0.749
1q63 AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.731
4gh3 0EVQueuine tRNA-ribosyltransferase 2.4.2.29 0.719
4gg9 0WWQueuine tRNA-ribosyltransferase 2.4.2.29 0.686
1q4w DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.682
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.680
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.676
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.671
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4gi4 0EXQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
1f3e DPZQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
4e5f 0N7Polymerase acidic protein / 0.656